STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE56208.1Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); Belongs to the DNA photolyase family. (492 aa)    
Predicted Functional Partners:
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
 
      0.880
SFE56144.1
Hypothetical protein.
       0.773
SFE56181.1
Hypothetical protein.
       0.773
SFF51273.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.745
SFF55176.1
TIGR03643 family protein.
 
     0.584
SFE56270.1
Signal transduction histidine kinase.
  
   0.551
SFE56239.1
butyryl-CoA dehydrogenase.
       0.511
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.485
SFE56095.1
Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
       0.468
SFE96127.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
 
  
 0.439
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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