STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE55299.1Histone H1-like protein Hc1. (64 aa)    
Predicted Functional Partners:
SFF30031.1
Hypothetical protein.
  
     0.757
SFE43376.1
YcxB-like protein.
  
     0.741
SFE39551.1
Hypothetical protein.
  
     0.713
SFE64894.1
Peptidase family M50.
  
     0.687
SFF26093.1
Cell division protein ZapA.
  
     0.675
SFF15738.1
Hypothetical protein.
  
     0.672
SFE93427.1
Hypothetical protein.
  
     0.616
SFF52465.1
Hypothetical protein.
  
     0.616
SFE50993.1
Gas vesicle protein.
  
     0.614
SFF05253.1
Gliding motility associated protien GldN.
  
     0.607
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.