STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (444 aa)    
Predicted Functional Partners:
SFF34559.1
Xylulokinase.
 
 
 0.888
SFF07709.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
 
 
 0.714
SFE94568.1
Glucokinase.
    
 0.682
SFE70338.1
Tagaturonate reductase.
     
 0.655
SFF32577.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
     
 0.637
SFF37965.1
Hypothetical protein.
  
  
  0.625
SFE52655.1
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
    
 0.594
SFF11835.1
Levanase; Belongs to the glycosyl hydrolase 32 family.
     
 0.577
SFF51384.1
Fructokinase.
     
 0.577
SFF13624.1
UDP-glucose dehydrogenase.
     
 0.573
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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