STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE64894.1Peptidase family M50. (397 aa)    
Predicted Functional Partners:
SFE64912.1
Protein of unknown function.
       0.752
SFE39551.1
Hypothetical protein.
  
     0.748
SFF15738.1
Hypothetical protein.
  
   
 0.733
SFE64956.1
Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.
  
    0.726
SFF31507.1
GldM C-terminal domain-containing protein.
  
     0.711
SFF52465.1
Hypothetical protein.
  
     0.697
SFE55299.1
Histone H1-like protein Hc1.
  
     0.687
SFF57106.1
Hypothetical protein.
  
     0.677
SFE43376.1
YcxB-like protein.
  
     0.676
SFE57792.1
Outer membrane protein assembly factor BamA.
 
  
 0.624
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.