STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE74350.1Transmembrane family 220, helix. (120 aa)    
Predicted Functional Partners:
SFE74321.1
Protease I.
       0.773
SFE74373.1
Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
       0.773
SFE74302.1
GAF domain-containing protein.
 
     0.676
SFE90332.1
Hypothetical protein.
  
     0.547
SFE96845.1
Hypothetical protein.
  
     0.494
SFE50686.1
Repeat domain-containing protein.
  
     0.489
SFF47755.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
     0.470
SFE74278.1
Protein of unknown function.
       0.461
SFF14345.1
Formiminoglutamase; Belongs to the arginase family.
  
     0.431
SFE61697.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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