Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFE76377.1Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component. (117 aa)    
Predicted Functional Partners:
SFE76402.1
Uncharacterized conserved protein, DUF433 family.
 
     0.944
SFF33387.1
Uncharacterized conserved protein, DUF433 family.
 
     0.770
SFE74769.1
Uncharacterized conserved protein, DUF433 family.
 
     0.767
SFF61524.1
Uncharacterized conserved protein, DUF433 family.
  
     0.747
SFF61513.1
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component.
  
     0.679
SFE80130.1
Uncharacterized conserved protein, DUF433 family.
  
     0.638
SFE80100.1
Hypothetical protein.
  
     0.495
SFF13226.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.486
SFE76434.1
Hypothetical protein.
       0.472
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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