STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE85143.1CubicO group peptidase, beta-lactamase class C family. (425 aa)    
Predicted Functional Partners:
SFF55842.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
    0.917
SFF46393.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
 
 
  0.910
SFE85124.1
OmpA family protein.
       0.594
SFE85168.1
CMP-N-acetylneuraminic acid synthetase.
       0.512
SFE85198.1
Multiple antibiotic resistance protein.
       0.512
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.493
SFE85220.1
Uncharacterized conserved protein, DUF2062 family.
       0.482
SFF53366.1
Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
      0.450
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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