STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE85558.1Iron-binding zinc finger CDGSH type. (144 aa)    
Predicted Functional Partners:
SFF02288.1
Putative NADH-flavin reductase.
  
    0.519
SFF40513.1
Putative NADH-flavin reductase.
  
    0.511
SFE85578.1
Outer membrane receptor proteins, mostly Fe transport.
       0.451
SFF02652.1
Protein of unknown function.
  
     0.442
SFF27989.1
Protocatechuate 3,4-dioxygenase beta subunit.
  
     0.428
SFF52886.1
Uncharacterized conserved protein, DUF1501 family.
  
     0.417
SFE85528.1
Glucose-fructose oxidoreductase.
  
    0.402
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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