STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE91946.1Manganese/zinc/iron transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. (319 aa)    
Predicted Functional Partners:
SFF21991.1
Manganese/zinc/iron transport system permease protein.
 
 0.999
SFF15753.1
Manganese/zinc/iron transport system ATP-binding protein.
 
 
 0.994
SFE80004.1
Manganese/zinc/iron transport system permease protein.
 
 0.990
SFE91967.1
Transglycosylase SLT domain-containing protein.
       0.642
SFF39515.1
Iron (metal) dependent repressor, DtxR family.
 
 
 0.577
rpsN
Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.576
rpmB
Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.572
SFE91990.1
AhpC/TSA family protein.
       0.529
SFE91922.1
Hypothetical protein.
       0.419
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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