STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF00093.1Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain. (202 aa)    
Predicted Functional Partners:
SFF51811.1
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 
      0.811
SFF50291.1
Cysteine desulfurase.
 
 
 0.697
SFF00072.1
Thioredoxin.
  
  
 0.691
SFE88856.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
   
 
 0.660
SFF00048.1
Protein of unknown function.
       0.655
SFE41333.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.556
SFF00028.1
Alcohol dehydrogenase, class IV.
       0.556
SFF32993.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
  
 
 0.556
SFF15703.1
4Fe-4S dicluster domain-containing protein.
   
    0.487
SFF30157.1
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase subunit (chain I).
   
    0.487
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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