STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF08401.1Por secretion system C-terminal sorting domain-containing protein. (1241 aa)    
Predicted Functional Partners:
SFE40166.1
NADH dehydrogenase subunit M.
    
 
 0.999
SFE50878.1
Protein-tyrosine phosphatase.
   
 
 0.999
SFE75529.1
TIR domain-containing protein.
    
 0.955
SFF40158.1
Sulfate permease, MFS superfamily.
  
 
   0.883
SFF32743.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
   0.831
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.747
SFF30074.1
Peptide/nickel transport system substrate-binding protein.
 
  
  0.672
SFF41856.1
PLD-like domain-containing protein.
    
 0.592
SFF11529.1
Peptide/nickel transport system permease protein.
    
  0.589
SFF24105.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.587
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.