STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF11529.1Peptide/nickel transport system permease protein. (351 aa)    
Predicted Functional Partners:
SFF16059.1
Peptide/nickel transport system permease protein.
 
 0.998
SFF16977.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.995
SFF30074.1
Peptide/nickel transport system substrate-binding protein.
 0.977
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.800
SFF11546.1
Protein of unknown function DUF115.
       0.746
SFF11507.1
Hypothetical protein.
       0.606
SFF60210.1
Hypothetical protein.
    
  0.597
SFF08401.1
Por secretion system C-terminal sorting domain-containing protein.
    
  0.589
SFF11492.1
Protein of unknown function.
       0.555
SFF11568.1
Phosphohistidine phosphatase.
       0.447
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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