STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF16918.1Glucose/arabinose dehydrogenase, beta-propeller fold. (378 aa)    
Predicted Functional Partners:
SFF48378.1
Cytochrome C oxidase, cbb3-type, subunit III.
   
  0.635
SFF16932.1
Adenylate cyclase, class 3; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
       0.618
SFF16944.1
Hypothetical protein.
       0.618
SFF06015.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 
  0.610
SFF35132.1
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.610
SFF42859.1
Cytochrome c oxidase assembly protein subunit 15.
  
     0.415
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.