STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF16951.1Putative DNA-binding domain-containing protein. (252 aa)    
Predicted Functional Partners:
SFE39551.1
Hypothetical protein.
  
     0.577
SFF23485.1
Hypothetical protein.
  
     0.569
SFF16965.1
Hypothetical protein.
       0.563
SFE38203.1
GWxTD domain-containing protein.
  
    0.549
SFF31323.1
Hypothetical protein.
  
     0.535
SFE40135.1
Tetratricopeptide repeat-containing protein.
  
     0.511
SFE55299.1
Histone H1-like protein Hc1.
  
     0.508
SFF44959.1
Thiamine pyrophosphokinase.
  
     0.490
SFF57106.1
Hypothetical protein.
  
     0.486
SFF39332.1
Heme exporter protein B.
  
     0.453
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.