STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF18323.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
SFF18343.1
Methyltransferase domain-containing protein.
 
     0.936
SFE86312.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.905
SFF18356.1
Hypothetical protein.
  
 
  0.780
SFF18299.1
Methyltransferase domain-containing protein.
       0.773
SFF18258.1
Nucleotidyltransferase domain-containing protein.
       0.651
SFF18281.1
Nucleotidyltransferase substrate binding protein, HI0074 family.
       0.651
SFE75401.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.648
SFE64460.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.620
SFF20506.1
Hypothetical protein.
  
     0.583
SFF18105.1
Glucose-1-phosphate cytidylyltransferase.
  
 
  0.564
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.