STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF19305.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (309 aa)    
Predicted Functional Partners:
SFE92631.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SFF25743.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.996
SFF20598.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  0.889
SFF49932.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
  0.889
SFF50372.1
Anti-sigma B factor antagonist.
  
  0.889
SFF50327.1
OmpA family protein.
   
   0.848
SFF19285.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.637
SFF19261.1
Hypothetical protein.
 
   
 0.611
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
 
    0.564
SFE90286.1
Beta-barrel assembly machine subunit BamD.
  
     0.548
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.