STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF19543.1Protein of unknown function. (493 aa)    
Predicted Functional Partners:
SFE43995.1
Hypothetical protein.
 
     0.788
SFE88042.1
Uncharacterized membrane protein.
 
     0.788
SFE84705.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.782
SFF25391.1
Carbohydrate binding module (family 6).
 
     0.778
SFE71241.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.536
SFF26044.1
Methane oxygenase PmoA.
  
     0.519
SFF12080.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.504
SFE76854.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.480
SFF19494.1
Type II restriction/modification system, DNA methylase subunit YeeA.
       0.479
SFE39605.1
Fucose permease.
  
     0.428
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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