STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF20992.1Cytochrome c. (352 aa)    
Predicted Functional Partners:
SFF30293.1
Cytochrome c oxidase subunit 2.
   
 0.935
SFF20970.1
Outer membrane porin, OprD family.
 
     0.880
SFF46292.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.798
SFF42525.1
Hypothetical protein.
 
     0.752
SFF46312.1
Cytochrome c oxidase cbb3-type subunit 3.
  
 
  0.612
SFE93694.1
Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.606
SFF30279.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
  0.597
SFF30362.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1.
    
  0.597
SFF30380.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
    
  0.597
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
    
  0.597
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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