STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF21958.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (260 aa)    
Predicted Functional Partners:
SFF21943.1
Hypothetical protein.
       0.741
SFF32743.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.675
SFE55599.1
Cytochrome P450.
  
 0.612
SFF32913.1
Phytoene/squalene synthetase.
  
 0.601
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.547
SFF11941.1
Protein of unknown function.
   
 0.519
SFE58456.1
Flavin-binding monooxygenase-like.
  
     0.516
SFE76289.1
Hypothetical protein.
   
 0.509
SFF21923.1
Opacity protein.
       0.505
SFE56671.1
Alkane 1-monooxygenase.
  
 
  0.456
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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