STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF24055.1Protein of unknown function. (293 aa)    
Predicted Functional Partners:
SFE76526.1
Hypothetical protein.
  
     0.754
SFE96098.1
Hypothetical protein.
  
     0.734
SFF23565.1
Polysaccharide export outer membrane protein.
  
     0.725
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.724
SFF31507.1
GldM C-terminal domain-containing protein.
  
     0.705
SFE92464.1
Gliding motility associated protien GldN.
  
     0.702
SFF05253.1
Gliding motility associated protien GldN.
  
     0.699
SFF10611.1
Hypothetical protein.
  
     0.699
SFE39802.1
Hypothetical protein.
  
     0.693
SFE82519.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.684
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.