STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF25509.1Catechol 2,3-dioxygenase. (130 aa)    
Predicted Functional Partners:
SFF25496.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
    0.776
SFE93937.1
methylmalonyl-CoA mutase C-terminal domain-containing protein.
    
 0.761
SFF34298.1
methylmalonyl-CoA mutase.
    
 0.761
SFE47454.1
methylmalonyl-CoA mutase.
    
 0.685
SFE55329.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.685
SFE50362.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.578
SFF21093.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.578
SFF25481.1
Uncharacterized conserved protein.
       0.509
nuoD
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
    0.403
SFF15703.1
4Fe-4S dicluster domain-containing protein.
   
    0.403
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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