STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF27703.1CxxC motif-containing protein, DUF1111 family. (471 aa)    
Predicted Functional Partners:
SFE55618.1
Putative iron-regulated protein.
 
    0.928
SFE52834.1
Predicted lipoprotein.
 
  
 0.811
SFF27721.1
Nucleotide-binding universal stress protein, UspA family.
       0.551
SFF27680.1
Hypothetical protein.
       0.520
SFF27659.1
tRNA1Val (adenine37-N6)-methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
       0.514
SFF27743.1
Nucleotide-binding universal stress protein, UspA family.
       0.451
SFF04728.1
iron(III) transport system substrate-binding protein.
 
    0.436
SFF57345.1
Putative hemin transport protein.
  
     0.436
SFE62577.1
Uncharacterized conserved protein, contains GH25 family domain.
   
    0.404
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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