STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF27989.1Protocatechuate 3,4-dioxygenase beta subunit. (404 aa)    
Predicted Functional Partners:
SFE67997.1
3-oxoacid CoA-transferase subunit B.
  
 
 0.820
SFF27971.1
NADPH:quinone reductase.
       0.757
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
    
 0.610
SFF32743.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.580
SFE71868.1
Hypothetical protein.
  
     0.555
SFF28009.1
Hypothetical protein.
       0.551
SFF61502.1
RHS repeat-associated core domain-containing protein.
  
     0.459
SFF33105.1
Hypothetical protein.
  
     0.456
SFF49813.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.444
SFE79509.1
Chorismate mutase.
  
   
 0.433
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.