STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF29356.1Cyclic nucleotide-binding domain-containing protein. (186 aa)    
Predicted Functional Partners:
SFE90446.1
Glutamate synthase (NADH) large subunit.
    
 0.770
SFE74532.1
PAS domain S-box-containing protein.
   
 0.734
SFE75076.1
PAS domain S-box-containing protein.
   
 0.734
SFF32514.1
PAS domain S-box-containing protein.
   
 0.734
SFF30176.1
Hypothetical protein.
  
     0.680
SFE57360.1
Hypothetical protein.
  
     0.673
SFF54922.1
CRISPR-associated endoribonuclease Cas6.
  
     0.667
SFF34622.1
Protein of unknown function.
  
     0.658
SFF00590.1
Predicted PurR-regulated permease PerM.
  
    0.657
SFF16453.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
  0.635
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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