STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF29455.1Peroxiredoxin. (183 aa)    
Predicted Functional Partners:
SFE75401.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.673
SFE51501.1
Hypothetical protein.
  
     0.657
SFF16965.1
Hypothetical protein.
  
     0.633
SFF31286.1
Hypothetical protein.
  
     0.633
SFF17926.1
ABC-type multidrug transport system, ATPase component.
  
     0.625
SFE57208.1
Hypothetical protein.
  
     0.613
SFF23565.1
Polysaccharide export outer membrane protein.
  
     0.587
SFF12238.1
PAS domain S-box-containing protein.
 
     0.584
SFF50884.1
Hypothetical protein.
  
     0.544
SFF31788.1
Hypothetical protein.
  
     0.513
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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