STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF29080.1Protein of unknown function. (251 aa)    
Predicted Functional Partners:
SFF29060.1
Tetratricopeptide repeat-containing protein.
 
    0.863
SFE88392.1
Outer membrane lipoprotein-sorting protein.
  
 
 
 0.777
SFE68643.1
Putative porin.
  
     0.699
SFF11960.1
Protein of unknown function.
  
     0.687
SFE80309.1
Tfp pilus assembly protein PilF.
  
  
 0.648
SFF30031.1
Hypothetical protein.
  
     0.631
SFF11507.1
Hypothetical protein.
  
     0.607
SFF23818.1
Gliding motility-associated protein GldM.
  
     0.587
SFF24341.1
CarboxypepD_reg-like domain-containing protein.
  
     0.573
SFF29101.1
Penicillin-binding protein 1A.
       0.572
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.