STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF29560.1Protein of unknown function. (421 aa)    
Predicted Functional Partners:
SFE49878.1
Cell surface protein SprA.
  
 
   0.963
dinB
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
    
   0.831
SFE89795.1
Tetratricopeptide repeat-containing protein.
  
     0.771
SFE75980.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.768
SFE62661.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.763
SFE49090.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.754
SFF02903.1
Hypothetical protein.
  
   
 0.751
SFF13349.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.749
SFE63641.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.742
SFF55261.1
Gliding motility-associated lipoprotein GldJ/gliding motility-associated lipoprotein GldJ,TIGR03530.
  
     0.742
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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