SFF36072.1 protein (Thermoflexibacter ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFF36072.1

Putative ABC transport system ATP-binding protein. (228 aa)

Predicted Functional Partners:

SFF39446.1

0.960

SFE99352.1

0.958

SFF31719.1

0.958

SFE49960.1

0.957

SFF31758.1

0.957

pstB

0.907

SFF16059.1

0.899

SFF40271.1

0.818

SFF51360.1

0.769

SFF46964.1

0.687

Your Current Organism:

Thermoflexibacter ruber

NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFE49960.1	SFF36072.1	SAMN04488541_100298	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.957
SFE99352.1	SFF36072.1	SAMN04488541_101244	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.958
SFF16059.1	SFF36072.1	SAMN04488541_101830	SAMN04488541_102824	Peptide/nickel transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.899
SFF16059.1	pstB	SAMN04488541_101830	SAMN04488541_10339	Peptide/nickel transport system permease protein.	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.824
SFF31719.1	SFF31758.1	SAMN04488541_102549	SAMN04488541_102550	Putative ABC transport system permease protein.	Putative ABC transport system permease protein.	0.569
SFF31719.1	SFF36072.1	SAMN04488541_102549	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.958
SFF31758.1	SFF31719.1	SAMN04488541_102550	SAMN04488541_102549	Putative ABC transport system permease protein.	Putative ABC transport system permease protein.	0.569
SFF31758.1	SFF36072.1	SAMN04488541_102550	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.957
SFF36072.1	SFE49960.1	SAMN04488541_102824	SAMN04488541_100298	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.957
SFF36072.1	SFE99352.1	SAMN04488541_102824	SAMN04488541_101244	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.958
SFF36072.1	SFF16059.1	SAMN04488541_102824	SAMN04488541_101830	Putative ABC transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.899
SFF36072.1	SFF31719.1	SAMN04488541_102824	SAMN04488541_102549	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.958
SFF36072.1	SFF31758.1	SAMN04488541_102824	SAMN04488541_102550	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.957
SFF36072.1	SFF39446.1	SAMN04488541_102824	SAMN04488541_103048	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.960
SFF36072.1	SFF40271.1	SAMN04488541_102824	SAMN04488541_103129	Putative ABC transport system ATP-binding protein.	Putative ABC transport system permease protein.	0.818
SFF36072.1	SFF46964.1	SAMN04488541_102824	SAMN04488541_103828	Putative ABC transport system ATP-binding protein.	Lipoprotein-releasing system permease protein.	0.687
SFF36072.1	SFF51360.1	SAMN04488541_102824	SAMN04488541_104519	Putative ABC transport system ATP-binding protein.	acyl-CoA thioesterase-1.	0.769
SFF36072.1	pstB	SAMN04488541_102824	SAMN04488541_10339	Putative ABC transport system ATP-binding protein.	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.907
SFF39446.1	SFF36072.1	SAMN04488541_103048	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.960
SFF40271.1	SFF36072.1	SAMN04488541_103129	SAMN04488541_102824	Putative ABC transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.818