STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF35718.1UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (346 aa)    
Predicted Functional Partners:
SFF25360.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.987
SFF05675.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.967
SFF34801.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
0.765
SFE70956.1
hydroxymethylglutaryl-CoA lyase.
      0.730
SFF13624.1
UDP-glucose dehydrogenase.
  
 
 0.684
SFF18105.1
Glucose-1-phosphate cytidylyltransferase.
  
 
 0.666
SFE99521.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
    
 0.664
SFF35698.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.655
SFE86312.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.654
SFF41238.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
   
  0.597
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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