STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF41189.1PAP2 superfamily protein. (210 aa)    
Predicted Functional Partners:
SFE55599.1
Cytochrome P450.
    
  0.644
SFF41179.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.634
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.588
SFE38415.1
4-amino-4-deoxy-L-arabinose transferase.
 
    0.551
SFF18239.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.546
SFF45548.1
Starch-binding associating with outer membrane.
  
 
   0.498
SFF45537.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
 0.494
SFF39416.1
O-succinylbenzoic acid--CoA ligase.
    
  0.475
SFF39475.1
fatty-acyl-CoA synthase.
    
  0.475
SFF54615.1
Long-chain acyl-CoA synthetase.
    
  0.475
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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