STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF45512.1Starch synthase. (272 aa)    
Predicted Functional Partners:
SFF55815.1
Starch phosphorylase.
  
 
 0.960
SFF42954.1
1,4-alpha-glucan branching enzyme.
 
 
 0.947
SFF60810.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.915
SFF00028.1
Alcohol dehydrogenase, class IV.
   
    0.712
SFE42316.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.702
SFF18239.1
Glycosyltransferase involved in cell wall bisynthesis.
     
 0.682
SFF39166.1
Glycosidase.
 
 
 0.675
SFF18105.1
Glucose-1-phosphate cytidylyltransferase.
    
 0.629
SFF31774.1
Alpha-amylase.
  
 
  0.626
SFF45525.1
Protein of unknown function.
  
    0.542
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.