STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF46413.1Glycosyltransferase involved in cell wall bisynthesis. (368 aa)    
Predicted Functional Partners:
SFE86312.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.892
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.774
SFF41238.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
    0.773
SFF46393.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
       0.773
SFE51501.1
Hypothetical protein.
  
     0.621
SFE38381.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.597
SFF43835.1
UDP-N-acetylglucosamine 4-epimerase.
  
 
  0.528
SFF46384.1
Molybdopterin molybdochelatase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.520
SFF23543.1
Capsular exopolysaccharide family.
 
  
 0.497
SFF16965.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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