STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF47641.1AAA ATPase domain-containing protein. (1389 aa)    
Predicted Functional Partners:
SFE41691.1
WD domain-containing protein, G-beta repeat-containing protein.
  
     0.578
SFE84571.1
Tetratricopeptide repeat-containing protein.
  
     0.540
SFF20872.1
CHAT domain-containing protein.
  
     0.536
SFF47657.1
DNA adenine methylase.
       0.526
SFF47671.1
AlwI restriction endonuclease.
       0.526
SFE89072.1
WD40 repeat.
  
     0.523
SFF50797.1
Tetratricopeptide repeat-containing protein.
  
     0.515
SFE82702.1
CHAT domain-containing protein.
  
     0.513
SFF50980.1
Tetratricopeptide repeat-containing protein.
  
     0.499
SFF44519.1
Tetratricopeptide repeat-containing protein.
  
     0.498
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.