STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF48318.1Protein of unknown function. (273 aa)    
Predicted Functional Partners:
SFF48305.1
Hypothetical protein.
       0.693
SFF28172.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
  
     0.668
SFE39932.1
Protein of unknown function.
 
     0.654
SFE43039.1
Sugar phosphate isomerase/epimerase.
  
     0.644
SFE81622.1
Predicted dehydrogenase.
  
     0.615
SFE93889.1
PA14 domain-containing protein.
 
     0.612
SFE93131.1
Oxidoreductase family, C-terminal alpha/beta domain.
  
     0.596
SFF48292.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
     0.555
SFE39605.1
Fucose permease.
 
     0.521
SFE62836.1
Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.510
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.