STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF49837.1Outer membrane protein OmpA. (644 aa)    
Predicted Functional Partners:
SFF54636.1
Outer membrane protein OmpA.
  
     0.712
SFF46292.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.687
SFF29576.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.682
SFF42395.1
Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  0.656
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.637
SFF34978.1
Lipoprotein-releasing system permease protein.
  
 
   0.620
SFE85124.1
OmpA family protein.
  
0.575
SFE56545.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.555
SFF56119.1
RHS repeat-associated core domain-containing protein.
  
     0.548
SFF46978.1
Peptidoglycan-associated lipoprotein.
  
  
0.541
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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