STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF49474.1CubicO group peptidase, beta-lactamase class C family. (373 aa)    
Predicted Functional Partners:
SFF49484.1
Hypothetical protein.
       0.773
SFE96745.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.750
SFE70142.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.732
SFF57758.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.656
SFF59188.1
CubicO group peptidase, beta-lactamase class C family.
  
 
  0.600
SFE84804.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.588
SFF64944.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.578
SFF46049.1
CubicO group peptidase, beta-lactamase class C family.
  
 
  0.525
SFF54260.1
Predicted ABC-type ATPase.
  
     0.514
SFE88902.1
Ion transport protein.
  
    0.506
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.