STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF52839.1Hypothetical protein. (525 aa)    
Predicted Functional Partners:
SFF52827.1
TonB-dependent receptor.
 
     0.889
SFF05961.1
TonB-dependent receptor.
     0.780
SFF52816.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
     0.665
SFE80309.1
Tfp pilus assembly protein PilF.
  
 
 0.639
SFF52852.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.620
SFE90286.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.618
SFE38990.1
Peptidase family M28.
  
     0.568
SFE63998.1
Beta-barrel assembly machine subunit BamA.
  
   0.553
SFE57792.1
Outer membrane protein assembly factor BamA.
   
   0.490
SFE87966.1
Surface antigen.
   
   0.490
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.