STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF53417.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (341 aa)    
Predicted Functional Partners:
SFF19590.1
Sulfatase-modifying factor enzyme 1.
  
     0.765
SFF04679.1
Sulfatase modifying factor 1.
  
     0.752
SFF03369.1
Sulfatase-modifying factor enzyme 1.
  
     0.706
SFE81622.1
Predicted dehydrogenase.
 
     0.693
SFF53445.1
Repeat domain-containing protein.
       0.625
SFF53404.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.568
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.454
SFF28172.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
     0.447
SFF42513.1
Arylsulfatase A.
  
 
   0.429
SFE62539.1
Protein of unknown function.
  
 
   0.426
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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