STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF55129.1Tetratricopeptide repeat-containing protein. (590 aa)    
Predicted Functional Partners:
SFF38303.1
TPR repeat-containing protein.
  
     0.763
SFF61188.1
TPR repeat-containing protein.
  
     0.763
SFE49142.1
TPR repeat-containing protein.
  
     0.747
SFF05292.1
Hypothetical protein.
  
     0.743
SFE81425.1
Tetratricopeptide repeat-containing protein.
  
     0.716
SFF42849.1
Tetratricopeptide repeat-containing protein.
  
     0.699
SFF24504.1
Tfp pilus assembly protein PilF.
  
  
  0.667
SFE69100.1
Tetratricopeptide repeat-containing protein.
  
     0.646
SFE74609.1
Tfp pilus assembly protein PilF.
  
     0.641
SFE96016.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.573
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.