STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF57471.1RHS repeat-associated core domain-containing protein. (339 aa)    
Predicted Functional Partners:
SFF57514.1
Hypothetical protein.
 
     0.827
SFF17126.1
Hypothetical protein.
  
     0.774
SFF57852.1
RHS repeat-associated core domain-containing protein.
  
     0.774
SFF65576.1
RHS repeat-associated core domain-containing protein.
  
     0.774
SFF54204.1
Hypothetical protein.
  
     0.772
SFF61846.1
Hypothetical protein.
  
     0.772
SFF56165.1
YD repeat-containing protein.
  
     0.766
SFF56119.1
RHS repeat-associated core domain-containing protein.
  
     0.715
SFF61785.1
Hypothetical protein.
  
     0.708
SFF57489.1
RHS repeat-associated core domain-containing protein.
 
    
0.579
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.