STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF58390.1Sugar phosphate isomerase/epimerase. (350 aa)    
Predicted Functional Partners:
SFE38960.1
Predicted dehydrogenase.
 
    0.831
SFE43009.1
Predicted dehydrogenase.
 
    0.667
SFF58378.1
Chemotaxis protein methyltransferase CheR.
       0.648
SFF18578.1
Choline dehydrogenase.
 
     0.601
SFF34397.1
Choline dehydrogenase.
 
     0.556
SFF18595.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.554
SFF32944.1
Sugar phosphate isomerase/epimerase.
 
     0.510
SFF58405.1
Transposase DDE domain-containing protein.
       0.459
SFE39932.1
Protein of unknown function.
 
     0.432
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.