STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF59290.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
SFF59279.1
Peptidase C39 family protein.
       0.773
SFF59269.1
Peroxiredoxin.
  
   0.640
SFF59301.1
Hypothetical protein.
       0.538
SFE99691.1
Thiol:disulfide interchange protein DsbD.
  
 
 0.452
SFF42290.1
Thioredoxin-related protein.
  
 
 0.452
SFF44888.1
Sporulation related domain-containing protein.
  
 
 0.452
SFF56733.1
Thioredoxin-like.
  
 
 0.452
SFF51248.1
Chemotaxis protein CheY-P-specific phosphatase CheC.
    
   0.422
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.418
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.