STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF60837.1Cytochrome C oxidase, cbb3-type, subunit III. (136 aa)    
Predicted Functional Partners:
SFF46292.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
SFF29443.1
Cytochrome c.
  
 
 0.707
SFF32743.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.701
SFE55874.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.675
SFF30279.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
  0.639
SFF30293.1
Cytochrome c oxidase subunit 2.
  
  0.625
SFE71241.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
   
 0.623
SFE58896.1
Cytochrome b6-f complex iron-sulfur subunit.
   
  0.622
SFE71148.1
Rieske [2Fe-2S] domain-containing protein.
   
  0.622
SFF23670.1
Hypothetical protein.
   
  0.622
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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