STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW95331.1RNA polymerase sigma factor, sigma F; Belongs to the sigma-70 factor family. (382 aa)    
Predicted Functional Partners:
AEW96886.1
Two-component system sensor kinase.
  
  
 0.901
AEW96463.1
Putative anti-sigma factor.
 
 
 0.806
AEW95332.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
   
0.763
AEW94246.1
Secreted protein.
  
  
 0.713
rpoB
Nos5; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.713
AEW96885.1
Regulatory protein.
 
 
 0.702
AEW95329.1
Hypothetical protein.
       0.697
AEW95327.1
Hypothetical protein.
 
     0.691
AEW97411.1
Putative magnesium or manganese-dependent protein phosphatase.
 
 
 0.668
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.661
Your Current Organism:
Streptomyces cattleya
NCBI taxonomy Id: 1003195
Other names: S. cattleya NRRL 8057 = DSM 46488, Streptomyces cattleya DSM 46488, Streptomyces cattleya DSM 46488 = NRRL 8057, Streptomyces cattleya JCM 4925, Streptomyces cattleya NBRC 14057, Streptomyces cattleya NRRL 8057, Streptomyces cattleya NRRL 8057 = DSM 46488
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