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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)    
Predicted Functional Partners:
Cpsf6
Cleavage and polyadenylation specificity factor subunit 6 isoform X2.
   
 0.999
Cpsf7
Cleavage and polyadenylation specificity factor subunit 7 isoform X1.
   
 0.998
Fip1l1
pre-mRNA 3'-end-processing factor FIP1.
   
 0.992
Ythdc2
Probable ATP-dependent RNA helicase YTHDC2.
   
 0.977
Cpsf4
Cleavage and polyadenylation specificity factor subunit 4 isoform X1.
    
 0.963
Ythdc1
YTH domain-containing protein 1 isoform X1.
    
 
 0.958
Cpsf4l
Putative cleavage and polyadenylation specificity factor subunit 4-like protein.
    
 0.944
Cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.940
Zc3h6
Zinc finger CCCH domain-containing protein 6 isoform X1.
    
 0.937
Pcf11
pre-mRNA cleavage complex 2 protein Pcf11 isoform X2.
    
 0.936
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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