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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Frg1Protein FRG1. (258 aa)    
Predicted Functional Partners:
Prpf8
pre-mRNA-processing-splicing factor 8.
    
 
 0.911
ENSMAUP00000012642
annotation not available
   
   0.894
Cwc22
pre-mRNA-splicing factor CWC22 homolog.
   
   0.894
ENSMAUP00000023663
annotation not available
   
   0.894
Prpf19
pre-mRNA-processing factor 19 isoform X1.
    
   0.881
Cdc40
pre-mRNA-processing factor 17.
    
   0.861
Eftud2
116 kDa U5 small nuclear ribonucleoprotein component isoform X1.
    
   0.778
Snrpe
Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development.
   
   0.765
Bcas2
pre-mRNA-splicing factor SPF27 isoform X1.
   
 
 0.764
Syf2
pre-mRNA-splicing factor SYF2 isoform X1.
   
   0.763
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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