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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmp1Metalloendopeptidase. (991 aa)    
Predicted Functional Partners:
Chrd
Chordin; Dorsalizing factor. Key developmental protein that dorsalizes early vertebrate embryonic tissues by binding to ventralizing TGF-beta family bone morphogenetic proteins (BMPs) and sequestering them in latent complexes.
   
 
 0.892
Pcolce
Procollagen C-endopeptidase enhancer 1.
    
0.795
Pcolce2
Procollagen C-endopeptidase enhancer 2.
    
0.682
C1r
Complement C1r subcomponent; Belongs to the peptidase S1 family.
    
0.675
Ece1
Endothelin-converting enzyme 1.
     
 0.656
Col3a1
Collagen alpha-1(III) chain.
    
 0.654
Col1a2
Collagen alpha-2(I) chain.
    
 0.633
Lox
Protein-lysine 6-oxidase isoform X1.
    
 0.629
Loxl3
Lysyl oxidase homolog 3.
    
 0.621
Col1a1
Collagen alpha-1(I) chain isoform X1.
    
 0.614
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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