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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem167aProtein kish; Involved in the early part of the secretory pathway. (72 aa)    
Predicted Functional Partners:
Rpp30
Ribonuclease P protein subunit p30.
   
 
 0.854
Rpp21
Ribonuclease P protein subunit p21.
   
 
  0.853
Rpp25
Ribonuclease P protein subunit p25.
   
 
 0.805
Rpp25l
Ribonuclease P protein subunit p25-like protein.
   
 
 0.805
Ier3ip1
Immediate early response 3-interacting protein 1.
   
   0.795
Hsdl2
Hydroxysteroid dehydrogenase-like protein 2.
    
  0.648
Snrpg
Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.
   
    0.620
Scfd1
Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.611
Fam162b
Protein FAM162B.
      
 0.602
Usp32
Ubiquitin carboxyl-terminal hydrolase 32; Belongs to the peptidase C19 family.
      
 0.595
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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