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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Grhl3Grainyhead-like protein 3 homolog. (574 aa)    
Predicted Functional Partners:
Arhgap29
Rho GTPase-activating protein 29.
      
 0.507
ENSMAUP00000000304
annotation not available
 
 
   0.498
Tbpl1
TATA box-binding protein-like protein 1.
    
 0.488
Tbpl2
TATA box-binding protein-like protein 2 isoform X1.
    
  0.485
Tbp
TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of a BRF2-containing transcription factor complex that regulates transcription mediated by RNA polymerase III. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (pre-initiation complex) during RNA polymerase [...]
    
  0.485
4833427G06Rik
UPF0722 protein C11orf88 homolog.
    
  0.481
Hoxb6
Homeobox protein Hox-B6.
    
 
 0.469
Hint1
Histidine triad nucleotide-binding protein 1.
   
 
  0.462
Hint2
Histidine triad nucleotide-binding protein 2, mitochondrial.
   
 
  0.462
Taf1c
TATA box-binding protein-associated factor RNA polymerase I subunit C.
   
 
  0.462
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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