Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Grhl3Grainyhead-like protein 3 homolog. (574 aa)    
Predicted Functional Partners:
Hoxb6
Homeobox protein Hox-B6.
    
 
 0.725
Arhgap29
Rho GTPase-activating protein 29.
      
 0.654
Gli3
Transcriptional activator GLI3.
    
 
 0.639
Znf750
Zinc finger protein 750.
   
  
 0.609
Tgm1
Protein-glutamine gamma-glutamyltransferase K.
   
  
 0.588
Irf5
Interferon regulatory factor 5.
    
 
 0.584
Irf6
Interferon regulatory factor 6.
    
 
 0.576
Kdf1
Keratinocyte differentiation factor 1.
   
  
 0.571
Taf2
Transcription initiation factor TFIID subunit 2 isoform X2.
    
   0.567
Ovol1
Putative transcription factor Ovo-like 1.
   
  
 0.557
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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