Ssbp3 protein (Mesocricetus auratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ssbp3

Single-stranded DNA-binding protein 3 isoform X2. (388 aa)

Predicted Functional Partners:

Ldb1

0.837

Ldb2

0.794

Ssbp2

0.629

Lhx9

0.622

Isl1

0.619

Isl2

0.614

Lhx3

0.606

Lmo4

0.604

Rnf11

0.596

Lmx1b

0.590

Your Current Organism:

Mesocricetus auratus

NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Isl1	Ldb1	ENSMAUP00000008360	ENSMAUP00000020523	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	LIM domain-binding protein 1 isoform X1.	0.938
Isl1	Ldb2	ENSMAUP00000008360	ENSMAUP00000022491	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	LIM domain-binding protein 2 isoform X1.	0.935
Isl1	Lhx3	ENSMAUP00000008360	ENSMAUP00000017638	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	LIM/homeobox protein Lhx3 isoform X1.	0.962
Isl1	Lmo4	ENSMAUP00000008360	ENSMAUP00000012484	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	LIM domain transcription factor LMO4.	0.429
Isl1	Ssbp2	ENSMAUP00000008360	ENSMAUP00000009564	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	Single-stranded DNA-binding protein 2 isoform X2.	0.841
Isl1	Ssbp3	ENSMAUP00000008360	ENSMAUP00000001525	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	Single-stranded DNA-binding protein 3 isoform X2.	0.619
Isl2	Ldb1	ENSMAUP00000023423	ENSMAUP00000020523	Insulin gene enhancer protein ISL-2.	LIM domain-binding protein 1 isoform X1.	0.900
Isl2	Ldb2	ENSMAUP00000023423	ENSMAUP00000022491	Insulin gene enhancer protein ISL-2.	LIM domain-binding protein 2 isoform X1.	0.897
Isl2	Lhx3	ENSMAUP00000023423	ENSMAUP00000017638	Insulin gene enhancer protein ISL-2.	LIM/homeobox protein Lhx3 isoform X1.	0.933
Isl2	Lmo4	ENSMAUP00000023423	ENSMAUP00000012484	Insulin gene enhancer protein ISL-2.	LIM domain transcription factor LMO4.	0.565
Isl2	Lmx1b	ENSMAUP00000023423	ENSMAUP00000024238	Insulin gene enhancer protein ISL-2.	LIM homeobox transcription factor 1-beta; Essential for the specification of dorsal limb fate at both the zeugopodal and autopodal levels. Mediates physical interaction and transcriptional synergy with E47/PAN-1.	0.442
Isl2	Ssbp2	ENSMAUP00000023423	ENSMAUP00000009564	Insulin gene enhancer protein ISL-2.	Single-stranded DNA-binding protein 2 isoform X2.	0.842
Isl2	Ssbp3	ENSMAUP00000023423	ENSMAUP00000001525	Insulin gene enhancer protein ISL-2.	Single-stranded DNA-binding protein 3 isoform X2.	0.614
Ldb1	Isl1	ENSMAUP00000020523	ENSMAUP00000008360	LIM domain-binding protein 1 isoform X1.	Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1. Binds to insulin gene enhancer sequences. Essential for [...]	0.938
Ldb1	Isl2	ENSMAUP00000020523	ENSMAUP00000023423	LIM domain-binding protein 1 isoform X1.	Insulin gene enhancer protein ISL-2.	0.900
Ldb1	Lhx3	ENSMAUP00000020523	ENSMAUP00000017638	LIM domain-binding protein 1 isoform X1.	LIM/homeobox protein Lhx3 isoform X1.	0.904
Ldb1	Lhx9	ENSMAUP00000020523	ENSMAUP00000007557	LIM domain-binding protein 1 isoform X1.	LIM/homeobox protein Lhx9.	0.925
Ldb1	Lmo4	ENSMAUP00000020523	ENSMAUP00000012484	LIM domain-binding protein 1 isoform X1.	LIM domain transcription factor LMO4.	0.903
Ldb1	Lmx1b	ENSMAUP00000020523	ENSMAUP00000024238	LIM domain-binding protein 1 isoform X1.	LIM homeobox transcription factor 1-beta; Essential for the specification of dorsal limb fate at both the zeugopodal and autopodal levels. Mediates physical interaction and transcriptional synergy with E47/PAN-1.	0.950
Ldb1	Ssbp2	ENSMAUP00000020523	ENSMAUP00000009564	LIM domain-binding protein 1 isoform X1.	Single-stranded DNA-binding protein 2 isoform X2.	0.983

page 1 of 4

Server load: low (36%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About